Coding portfolio

Below describes my coding projects and links to my Github repository

Project 1: Develop a tool called vcfhelper in Python to aid with processing variant-calling-format (VCF) files.

• vcfhelper extracts any annotations of interest of the VCF file which can then be used to plot for visualization
• Github link

Project 2: Develop workflows for running analyses on UKB-RAP

• Github link

Project 3: Parse GTEx dataset

• Github link

Project 4: rshiny app projects

• Over the years, I have developed applications in Rshiny to share results from my research.
• Github repo where I share some notes on Rshiny development.
• I have published the following Rshiny apps:
  1. NIPT analyses:
• https://tanyaphung.shinyapps.io/nipt_analyses/
• Github link

1. X chromosome inactivation:
   • https://tanyaphung.shinyapps.io/X-inactivation/